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News

Emergence of Glass-like Behavior in Markov State Models of Protein Folding Dynamics.

October 21, 2013 by Tor Raswill

J. K. Weber, R. Jack, and V. S. Pande.  JACS, in press (2013) With all of our work in protein folding, we can step back and ask questions of what’s common, especially…

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To milliseconds and beyond: challenges in the simulation of protein folding.

October 21, 2013 by Tor Raswill

Lane TJ, Shukla D, Beauchamp KA, Pande VS. Current Opinion in Structural Biology (Feb 2013) The folding times accessible by simulation have increased exponentially over the past decade. Shown are…

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OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation.

October 21, 2013 by Tor Raswill

Eastman P, Friedrichs MS, Chodera JD, Radmer RJ, Bruns CM, Ku JP, Beauchamp KA, Lane TJ, Wang LP, Shukla D, Tye T, Houston M, Stich T, Klein C, Shirts MR,…

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MSMExplorer: Visualizing Markov State Models for Biomolecule Folding Simulations.

October 21, 2013 by Tor Raswill

Cronkite-Ratcliff B, Pande V. Bioinformatics. (Jan 2013) ABSTRACT. Markov state models (MSMs) for the study of biomolecule folding simulations have emerged as a powerful tool for computational study of folding…

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Building Markov state models with solvent dynamics

October 21, 2013 by Tor Raswill

Gu C, Chang HW, Maibaum L, Pande VS, Carlsson GE, Guibas LJ. BMC Bioinformatics, (Jan 2013) doi: 10.1186/1471-2105-14-S2-S8 SUMMARY. In this paper we have initiated an study to build Markov…

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Planned server room shutdown October 22 at 6am pacific time

October 11, 2013 by Vijay Pande

One of our main server rooms is going through planned maintenance on Tuesday, October 22 starting at 6:00 AM pacific time.  The outage is expected to be less than one hour,…

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Congratulations to Michael Levitt

October 10, 2013 by Vijay Pande

We were very excited to see that Michael Levitt is a co-recipient of the 2013 Nobel Prize in Chemistry.  Dr. Levitt has been a mentor of mine since I got…

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Core16 GPU core approaching end of life

September 28, 2013 by Vijay Pande

Our projects which use Core16 have completed and this means that Core16 is reaching its end of life, as the Core17 GPU core has some key features needed in new…

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A significant milestone – 10 PetaFLOPs

September 19, 2013 by Folding@Home

Folding@home has historically been an extremely powerful computing resource. And in 2013, we exceeded the 10 PetaFLOPs barrier.

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http://foldingforum.org down for service

September 17, 2013 by Vijay Pande

The http://foldingforum.org/ forum is currently down for servicing.  In particular, we are adding https support for more secure logins to the forum.  There will be a DNS change associated with the…

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