MSMExplorer: Visualizing Markov State Models for Biomolecule Folding Simulations.

Cronkite-Ratcliff B, Pande V.

Bioinformatics. (Jan 2013)

Markov state models (MSMs) for the study of biomolecule folding simulations have emerged as a powerful tool for computational study of folding dynamics. MSMExplorer is a visualization application purpose-built to visualize these MSMs with an aim to increase the efficacy and reach of MSM science.

MSMExplorer is available for download from The source code is made available under the GNU Lesser General Public License at