Peter M. Kasson and Vijay S. Pande. Pacific Symposium on Biocomputing 14:492-503(2009). SUMMARY. The influenza hemagglutinin protein performs several important functions, including attaching the virus to cells it will infect…
Read moreEdgar Luttmann, Daniel L. Ensign, Vishal Vaidyanathan, Mike Houston, Noam Rimon, Jeppe Øland, Guha Jayachandran, Mark Friedrichs, Vijay S. Pande. Journal of Computational Chemistry (2009) SUMMARY. In this paper, we…
Read morePaula M. Petrone, Christopher D. Snow, Del Lucent, and Vijay S. Pande Proceedings of the National Academy of Sciences, USA 2008 SUMMARY The ribosome is a fascinating molecular machine, responsible…
Read moreNicholas W. Kelley, V. Vishal, Grant A. Krafft, and Vijay S. Pande J. Chem. Phys. 129, 214707 (2008); DOI:10.1063/1.3010881 SUMMARY. Abeta misfolding and aggregation is believed to be the cause…
Read moreGregory R. Bowman, Xuhui Huang, Yuan Yao, Jian Sun, Gunnar Carlsson, Leonidas J. Guibas, and Vijay S. Pande J. Am. Chem. Soc., 130 (30), 9676–9678, 2008 ABSTRACT. Hairpins are a…
Read moreXuhui Huang,Gregory R. Bowman,and Vijay S. Pande J Chem Phys. 2008 May 28;128(20):205106. ABSTRACT.We have implemented the serial replica exchange method (SREM) and simulated tempering (ST) enhanced sampling algorithms in…
Read moreNina Singhal Heinrichs and Vijay S. Pande. Journal of Chemical Physics (2007) SUMMARY. This paper lays out how one can revamp FAH calculations to make them considerably more efficient, perhaps…
Read moreD. Ensign, P. M. Kasson, and V. S. Pande. Journal of Molecular Biology (2007) SUMMARY: This paper describes the first set of results generated using the SMP clients. The main…
Read moreP. M. Kasson and V. S. Pande. PLoS Computational Biology (2007) SUMMARY: Here, we use molecular molecular-dynamics simulations of lipid vesicle fusion under different lipid compositions to generate a more…
Read moreP. M. Kasson, A. Zomorodian, S. Park, N. Singhal, L. J. Guibas, and V. S. Pande. Bioinformatics (2007) SUMMARY: One challenge in analyzing membrane fusion pathways is simply characterizing the…
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