Author: Viktor

AJ DePaul, EJ Thompson, SS Patel, K Haldeman & EJ Sorin. Nucleic Acids Research (2010) 38, 4856-4867 (Featured Cover Article) SUMMARY. We continue to study a small but ubiquitous RNA…

EJ Thompson, AJ DePaul, SS Patel & EJ Sorin. PLoS ONE (2010) 5, e10056 SUMMARY. Our assessment of biophysical force fields as applied to helical peptides and proteins continues with…

V. S. Pande. Physical Review Letters (2010). SUMMARY. Recent work from detailed simulations of protein folding resulting from Folding@home have suggested some surprises and radical changes in how one conceptualizes…

G. R. Bowman and V. S. Pande. Proceedings of the National Academy of Sciences, USA (2010). SUMMARY. By analyzing recent results from Folding@home, we have found a set of general…

P. M. Kasson, E. Lindahl, and V. S. Pande. PLoS Computational Biology 6(6): e1000829 (2010). SUMMARY. Membrane fusion is a common underlying process critical to neurotransmitter release, cellular trafficking, and…

Voelz VA, Bowman GR, Beauchamp K, Pande VS. Journal of the American Chemical Society (2010) SUMMARY. Simulating protein folding on the millisecond timescale has been a major challenge for many…

S. Bacallado, J. Chodera, and V. Pande. Journal of Chemical Physics 131, 045106 (2009). SUMMARY. Markov State Models (MSMs) are one of the most common ways to analyze Folding@Home simulations.…

P. M. Kasson, D. L. Ensign, and V. S. Pande. Journal of the American Chemical Society (2009). Published online 2009 July 28. SUMMARY. The influenza virus infects people and animals…

G. R. Bowman and V. S. Pande. PLoS ONE 4(6): e5840 (2009) ABSTRACT. Here we continue our efforts to use methods developed in the folding mechanism community to both better…

G. R. Bowman, X. Huang, and V. S. Pande. Methods 49(2): 197-201 (2009) ABSTRACT Part of understanding a molecule’s conformational dynamics is mapping out the dominant metastable, or long lived,…