MSMExplorer: Visualizing Markov State Models for Biomolecule Folding Simulations.

Cronkite-Ratcliff B, Pande V.

Bioinformatics. (Jan 2013)

ABSTRACT.
Markov state models (MSMs) for the study of biomolecule folding simulations have emerged as a powerful tool for computational study of folding dynamics. MSMExplorer is a visualization application purpose-built to visualize these MSMs with an aim to increase the efficacy and reach of MSM science.

MSMExplorer is available for download from https://simtk.org/home/msmexplorer. The source code is made available under the GNU Lesser General Public License at https://github.com/SimTk/msmexplorer.